docs(cli): add command restructure audit and implementation plan

CLI audit scoring the current command surface across human ergonomics,
robot/agent ergonomics, documentation quality, and flag design. Paired
with a detailed implementation plan for restructuring commands into a
more consistent, discoverable hierarchy.
This commit is contained in:
teernisse
2026-03-10 11:06:19 -04:00
parent 4b0535f852
commit 06852e90a6
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# Command Restructure: Implementation Plan
**Reference:** `command-restructure/CLI_AUDIT.md`
**Scope:** 10 proposals, 3 implementation phases, estimated ~15 files touched
---
## Phase 1: Zero-Risk Quick Wins (1 commit)
These four changes are purely additive -- no behavior changes, no renames, no removed commands.
### P1: Help Grouping
**Goal:** Group the 29 visible commands into 5 semantic clusters in `--help` output.
**File:** `src/cli/mod.rs` (lines 117-399, the `Commands` enum)
**Changes:** Add `#[command(help_heading = "...")]` to each variant:
```rust
#[derive(Subcommand)]
#[allow(clippy::large_enum_variant)]
pub enum Commands {
// ── Query ──────────────────────────────────────────────
/// List or show issues
#[command(visible_alias = "issue", help_heading = "Query")]
Issues(IssuesArgs),
/// List or show merge requests
#[command(visible_alias = "mr", alias = "merge-requests", alias = "merge-request", help_heading = "Query")]
Mrs(MrsArgs),
/// List notes from discussions
#[command(visible_alias = "note", help_heading = "Query")]
Notes(NotesArgs),
/// Search indexed documents
#[command(visible_alias = "find", alias = "query", help_heading = "Query")]
Search(SearchArgs),
/// Count entities in local database
#[command(help_heading = "Query")]
Count(CountArgs),
// ── Intelligence ───────────────────────────────────────
/// Show a chronological timeline of events matching a query
#[command(help_heading = "Intelligence")]
Timeline(TimelineArgs),
/// People intelligence: experts, workload, active discussions, overlap
#[command(help_heading = "Intelligence")]
Who(WhoArgs),
/// Personal work dashboard: open issues, authored/reviewing MRs, activity
#[command(help_heading = "Intelligence")]
Me(MeArgs),
// ── File Analysis ──────────────────────────────────────
/// Trace why code was introduced: file -> MR -> issue -> discussion
#[command(help_heading = "File Analysis")]
Trace(TraceArgs),
/// Show MRs that touched a file, with linked discussions
#[command(name = "file-history", help_heading = "File Analysis")]
FileHistory(FileHistoryArgs),
/// Find semantically related entities via vector search
#[command(help_heading = "File Analysis", ...)]
Related { ... },
/// Detect discussion divergence from original intent
#[command(help_heading = "File Analysis", ...)]
Drift { ... },
// ── Data Pipeline ──────────────────────────────────────
/// Run full sync pipeline: ingest -> generate-docs -> embed
#[command(help_heading = "Data Pipeline")]
Sync(SyncArgs),
/// Ingest data from GitLab
#[command(help_heading = "Data Pipeline")]
Ingest(IngestArgs),
/// Generate searchable documents from ingested data
#[command(name = "generate-docs", help_heading = "Data Pipeline")]
GenerateDocs(GenerateDocsArgs),
/// Generate vector embeddings for documents via Ollama
#[command(help_heading = "Data Pipeline")]
Embed(EmbedArgs),
// ── System ─────────────────────────────────────────────
// (init, status, health, doctor, stats, auth, token, migrate, cron,
// completions, robot-docs, version -- all get help_heading = "System")
}
```
**Verification:**
- `lore --help` shows grouped output
- All existing commands still work identically
- `lore robot-docs` output unchanged (robot-docs is hand-crafted, not derived from clap)
**Files touched:** `src/cli/mod.rs` only
---
### P3: Singular/Plural Entity Type Fix
**Goal:** Accept both `issue`/`issues`, `mr`/`mrs` everywhere entity types are value-parsed.
**File:** `src/cli/args.rs`
**Change 1 -- `CountArgs.entity` (line 819):**
```rust
// BEFORE:
#[arg(value_parser = ["issues", "mrs", "discussions", "notes", "events"])]
pub entity: String,
// AFTER:
#[arg(value_parser = ["issue", "issues", "mr", "mrs", "discussion", "discussions", "note", "notes", "event", "events"])]
pub entity: String,
```
**File:** `src/cli/args.rs`
**Change 2 -- `SearchArgs.source_type` (line 369):**
```rust
// BEFORE:
#[arg(long = "type", value_parser = ["issue", "mr", "discussion", "note"], ...)]
pub source_type: Option<String>,
// AFTER:
#[arg(long = "type", value_parser = ["issue", "issues", "mr", "mrs", "discussion", "discussions", "note", "notes"], ...)]
pub source_type: Option<String>,
```
**File:** `src/cli/mod.rs`
**Change 3 -- `Drift.entity_type` (line 287):**
```rust
// BEFORE:
#[arg(value_parser = ["issues"])]
pub entity_type: String,
// AFTER:
#[arg(value_parser = ["issue", "issues"])]
pub entity_type: String,
```
**Normalization layer:** In the handlers that consume these values, normalize to the canonical form (plural for entity names, singular for source_type) so downstream code doesn't need changes:
**File:** `src/app/handlers.rs`
In `handle_count` (~line 409): Normalize entity string before passing to `run_count`:
```rust
let entity = match args.entity.as_str() {
"issue" => "issues",
"mr" => "mrs",
"discussion" => "discussions",
"note" => "notes",
"event" => "events",
other => other,
};
```
In `handle_search` (search handler): Normalize source_type:
```rust
let source_type = args.source_type.as_deref().map(|t| match t {
"issues" => "issue",
"mrs" => "mr",
"discussions" => "discussion",
"notes" => "note",
other => other,
});
```
In `handle_drift` (~line 225): Normalize entity_type:
```rust
let entity_type = if entity_type == "issue" { "issues" } else { &entity_type };
```
**Verification:**
- `lore count issue` works (same as `lore count issues`)
- `lore search --type issues 'foo'` works (same as `--type issue`)
- `lore drift issue 42` works (same as `drift issues 42`)
- All existing invocations unchanged
**Files touched:** `src/cli/args.rs`, `src/cli/mod.rs`, `src/app/handlers.rs`
---
### P5: Fix `-f` Short Flag Collision
**Goal:** Remove `-f` shorthand from `count --for` so `-f` consistently means `--force` across the CLI.
**File:** `src/cli/args.rs` (line 823)
```rust
// BEFORE:
#[arg(short = 'f', long = "for", value_parser = ["issue", "mr"])]
pub for_entity: Option<String>,
// AFTER:
#[arg(long = "for", value_parser = ["issue", "mr"])]
pub for_entity: Option<String>,
```
**Also update the value_parser to accept both forms** (while we're here):
```rust
#[arg(long = "for", value_parser = ["issue", "issues", "mr", "mrs"])]
pub for_entity: Option<String>,
```
And normalize in `handle_count`:
```rust
let for_entity = args.for_entity.as_deref().map(|f| match f {
"issues" => "issue",
"mrs" => "mr",
other => other,
});
```
**File:** `src/app/robot_docs.rs` (line 173) -- update the robot-docs entry:
```rust
// BEFORE:
"flags": ["<entity: issues|mrs|discussions|notes|events>", "-f/--for <issue|mr>"],
// AFTER:
"flags": ["<entity: issues|mrs|discussions|notes|events>", "--for <issue|mr>"],
```
**Verification:**
- `lore count notes --for mr` still works
- `lore count notes -f mr` now fails with a clear error (unknown flag `-f`)
- `lore ingest -f` still works (means `--force`)
**Files touched:** `src/cli/args.rs`, `src/app/robot_docs.rs`
---
### P9: Consistent `--open` Short Flag on `notes`
**Goal:** Add `-o` shorthand to `notes --open`, matching `issues` and `mrs`.
**File:** `src/cli/args.rs` (line 292)
```rust
// BEFORE:
#[arg(long, help_heading = "Actions")]
pub open: bool,
// AFTER:
#[arg(short = 'o', long, help_heading = "Actions", overrides_with = "no_open")]
pub open: bool,
#[arg(long = "no-open", hide = true, overrides_with = "open")]
pub no_open: bool,
```
**Verification:**
- `lore notes -o` opens first result in browser
- Matches behavior of `lore issues -o` and `lore mrs -o`
**Files touched:** `src/cli/args.rs`
---
### Phase 1 Commit Summary
**Files modified:**
1. `src/cli/mod.rs` -- help_heading on all Commands variants + drift value_parser
2. `src/cli/args.rs` -- singular/plural value_parsers, remove `-f` from count, add `-o` to notes
3. `src/app/handlers.rs` -- normalization of entity/source_type strings
4. `src/app/robot_docs.rs` -- update count flags documentation
**Test plan:**
```bash
cargo check --all-targets
cargo clippy --all-targets -- -D warnings
cargo fmt --check
cargo test
lore --help # Verify grouped output
lore count issue # Verify singular accepted
lore search --type issues 'x' # Verify plural accepted
lore drift issue 42 # Verify singular accepted
lore notes -o # Verify short flag works
```
---
## Phase 2: Renames and Merges (2-3 commits)
These changes rename commands and merge overlapping ones. Hidden aliases preserve backward compatibility.
### P2: Rename `stats` -> `index`
**Goal:** Eliminate `status`/`stats`/`stat` confusion. `stats` becomes `index`.
**File:** `src/cli/mod.rs`
```rust
// BEFORE:
/// Show document and index statistics
#[command(visible_alias = "stat", help_heading = "System")]
Stats(StatsArgs),
// AFTER:
/// Show document and index statistics
#[command(visible_alias = "idx", alias = "stats", alias = "stat", help_heading = "System")]
Index(StatsArgs),
```
Note: `alias = "stats"` and `alias = "stat"` are hidden aliases (not `visible_alias`) -- old invocations still work, but `--help` shows `index`.
**File:** `src/main.rs` (line 257)
```rust
// BEFORE:
Some(Commands::Stats(args)) => handle_stats(cli.config.as_deref(), args, robot_mode).await,
// AFTER:
Some(Commands::Index(args)) => handle_stats(cli.config.as_deref(), args, robot_mode).await,
```
**File:** `src/app/robot_docs.rs` (line 181)
```rust
// BEFORE:
"stats": {
"description": "Show document and index statistics",
...
// AFTER:
"index": {
"description": "Show document and index statistics (formerly 'stats')",
...
```
Also update references in:
- `robot_docs.rs` quick_start.lore_exclusive array (line 415): `"stats: Database statistics..."` -> `"index: Database statistics..."`
- `robot_docs.rs` aliases.deprecated_commands: add `"stats": "index"`, `"stat": "index"`
**File:** `src/cli/autocorrect.rs`
Update `CANONICAL_SUBCOMMANDS` (line 366-area):
```rust
// Replace "stats" with "index" in the canonical list
// Add ("stats", "index") and ("stat", "index") to SUBCOMMAND_ALIASES
```
Update `COMMAND_FLAGS` (line 166-area):
```rust
// BEFORE:
("stats", &["--check", ...]),
// AFTER:
("index", &["--check", ...]),
```
**File:** `src/cli/robot.rs` -- update `expand_fields_preset` if any preset key is `"stats"` (currently no stats preset, so no change needed).
**Verification:**
- `lore index` works (shows document/index stats)
- `lore stats` still works (hidden alias)
- `lore stat` still works (hidden alias)
- `lore index --check` works
- `lore --help` shows `index` in System group, not `stats`
- `lore robot-docs` shows `index` key in commands map
**Files touched:** `src/cli/mod.rs`, `src/main.rs`, `src/app/robot_docs.rs`, `src/cli/autocorrect.rs`
---
### P4: Merge `health` into `doctor`
**Goal:** One diagnostic command (`doctor`) with a `--quick` flag for the pre-flight check that `health` currently provides.
**File:** `src/cli/mod.rs`
```rust
// BEFORE:
/// Quick health check: config, database, schema version
#[command(after_help = "...")]
Health,
/// Check environment health
#[command(after_help = "...")]
Doctor,
// AFTER:
// Remove Health variant entirely. Add hidden alias:
/// Check environment health (--quick for fast pre-flight)
#[command(
after_help = "...",
alias = "health", // hidden backward compat
help_heading = "System"
)]
Doctor {
/// Fast pre-flight check only (config, DB, schema). Exit 0 = healthy.
#[arg(long)]
quick: bool,
},
```
**File:** `src/main.rs`
```rust
// BEFORE:
Some(Commands::Doctor) => handle_doctor(cli.config.as_deref(), robot_mode).await,
...
Some(Commands::Health) => handle_health(cli.config.as_deref(), robot_mode).await,
// AFTER:
Some(Commands::Doctor { quick }) => {
if quick {
handle_health(cli.config.as_deref(), robot_mode).await
} else {
handle_doctor(cli.config.as_deref(), robot_mode).await
}
}
// Health variant removed from enum, so no separate match arm
```
**File:** `src/app/robot_docs.rs`
Merge the `health` and `doctor` entries:
```rust
"doctor": {
"description": "Environment health check. Use --quick for fast pre-flight (exit 0 = healthy, 19 = unhealthy).",
"flags": ["--quick"],
"example": "lore --robot doctor",
"notes": {
"quick_mode": "lore --robot doctor --quick — fast pre-flight check (formerly 'lore health'). Only checks config, DB, schema version. Returns exit 19 on failure.",
"full_mode": "lore --robot doctor — full diagnostic: config, auth, database, Ollama"
},
"response_schema": {
"full": { ... }, // current doctor schema
"quick": { ... } // current health schema
}
}
```
Remove the standalone `health` entry from the commands map.
**File:** `src/cli/autocorrect.rs`
- Remove `"health"` from `CANONICAL_SUBCOMMANDS` (clap's `alias` handles it)
- Or keep it -- since clap treats aliases as valid subcommands, the autocorrect system will still resolve typos like `"helth"` to `"health"` which clap then maps to `doctor`. Either way works.
**File:** `src/app/robot_docs.rs` -- update `workflows.pre_flight`:
```rust
"pre_flight": [
"lore --robot doctor --quick"
],
```
Add to aliases.deprecated_commands:
```rust
"health": "doctor --quick"
```
**Verification:**
- `lore doctor` runs full diagnostic (unchanged behavior)
- `lore doctor --quick` runs fast pre-flight (exit 0/19)
- `lore health` still works (hidden alias, runs `doctor --quick`)
- `lore --help` shows only `doctor` in System group
- `lore robot-docs` shows merged entry
**Files touched:** `src/cli/mod.rs`, `src/main.rs`, `src/app/robot_docs.rs`, `src/cli/autocorrect.rs`
**Important edge case:** `lore health` via the hidden alias will invoke `Doctor { quick: false }` unless we handle it specially. Two options:
**Option A (simpler):** Instead of making `health` an alias of `doctor`, keep both variants but hide `Health`:
```rust
#[command(hide = true, help_heading = "System")]
Health,
```
Then in `main.rs`, `Commands::Health` maps to `handle_health()` as before. This is less clean but zero-risk.
**Option B (cleaner):** In the autocorrect layer, rewrite `health` -> `doctor --quick` before clap parsing:
```rust
// In SUBCOMMAND_ALIASES or a new pre-clap rewrite:
("health", "doctor"), // plus inject "--quick" flag
```
This requires a small enhancement to autocorrect to support flag injection during alias resolution.
**Recommendation:** Use Option A for initial implementation. It's one line (`hide = true`) and achieves the goal of removing `health` from `--help` while preserving full backward compatibility. The `doctor --quick` flag is additive.
---
### P7: Hide Pipeline Sub-stages
**Goal:** Remove `ingest`, `generate-docs`, `embed` from `--help` while keeping them fully functional.
**File:** `src/cli/mod.rs`
```rust
// Add hide = true to each:
/// Ingest data from GitLab
#[command(hide = true)]
Ingest(IngestArgs),
/// Generate searchable documents from ingested data
#[command(name = "generate-docs", hide = true)]
GenerateDocs(GenerateDocsArgs),
/// Generate vector embeddings for documents via Ollama
#[command(hide = true)]
Embed(EmbedArgs),
```
**File:** `src/cli/mod.rs` -- Update `Sync` help text to mention the individual stage commands:
```rust
/// Run full sync pipeline: ingest -> generate-docs -> embed
#[command(after_help = "\x1b[1mExamples:\x1b[0m
lore sync # Full pipeline: ingest + docs + embed
lore sync --no-embed # Skip embedding step
...
\x1b[1mIndividual stages:\x1b[0m
lore ingest # Fetch from GitLab only
lore generate-docs # Rebuild documents only
lore embed # Re-embed only",
help_heading = "Data Pipeline"
)]
Sync(SyncArgs),
```
**File:** `src/app/robot_docs.rs` -- Add a `"hidden": true` field to the ingest/generate-docs/embed entries so agents know these are secondary:
```rust
"ingest": {
"hidden": true,
"description": "Sync data from GitLab (prefer 'sync' for full pipeline)",
...
```
**Verification:**
- `lore --help` no longer shows ingest, generate-docs, embed
- `lore ingest`, `lore generate-docs`, `lore embed` all still work
- `lore sync --help` mentions individual stage commands
- `lore robot-docs` still includes all three (with `hidden: true`)
**Files touched:** `src/cli/mod.rs`, `src/app/robot_docs.rs`
---
### Phase 2 Commit Summary
**Commit A: Rename `stats` -> `index`**
- `src/cli/mod.rs`, `src/main.rs`, `src/app/robot_docs.rs`, `src/cli/autocorrect.rs`
**Commit B: Merge `health` into `doctor`, hide pipeline stages**
- `src/cli/mod.rs`, `src/main.rs`, `src/app/robot_docs.rs`, `src/cli/autocorrect.rs`
**Test plan:**
```bash
cargo check --all-targets
cargo clippy --all-targets -- -D warnings
cargo fmt --check
cargo test
# Rename verification
lore index # Works (new name)
lore stats # Works (hidden alias)
lore index --check # Works
# Doctor merge verification
lore doctor # Full diagnostic
lore doctor --quick # Fast pre-flight
lore health # Still works (hidden)
# Hidden stages verification
lore --help # ingest/generate-docs/embed gone
lore ingest # Still works
lore sync --help # Mentions individual stages
```
---
## Phase 3: Structural Consolidation (requires careful design)
These changes merge or absorb commands. More effort, more testing, but the biggest UX wins.
### P6: Consolidate `file-history` into `trace`
**Goal:** `trace` absorbs `file-history`. One command for file-centric intelligence.
**Approach:** Add `--mrs-only` flag to `trace`. When set, output matches `file-history` format (flat MR list, no issue/discussion linking). `file-history` becomes a hidden alias.
**File:** `src/cli/args.rs` -- Add flag to `TraceArgs`:
```rust
pub struct TraceArgs {
pub path: String,
#[arg(short = 'p', long, help_heading = "Filters")]
pub project: Option<String>,
#[arg(long, help_heading = "Output")]
pub discussions: bool,
#[arg(long = "no-follow-renames", help_heading = "Filters")]
pub no_follow_renames: bool,
#[arg(short = 'n', long = "limit", default_value = "20", help_heading = "Output")]
pub limit: usize,
// NEW: absorb file-history behavior
/// Show only MR list without issue/discussion linking (file-history mode)
#[arg(long = "mrs-only", help_heading = "Output")]
pub mrs_only: bool,
/// Only show merged MRs (file-history mode)
#[arg(long, help_heading = "Filters")]
pub merged: bool,
}
```
**File:** `src/cli/mod.rs` -- Hide `FileHistory`:
```rust
/// Show MRs that touched a file, with linked discussions
#[command(name = "file-history", hide = true, help_heading = "File Analysis")]
FileHistory(FileHistoryArgs),
```
**File:** `src/app/handlers.rs` -- Route `trace --mrs-only` to the file-history handler:
```rust
fn handle_trace(
config_override: Option<&str>,
args: TraceArgs,
robot_mode: bool,
) -> Result<(), Box<dyn std::error::Error>> {
if args.mrs_only {
// Delegate to file-history handler
let fh_args = FileHistoryArgs {
path: args.path,
project: args.project,
discussions: args.discussions,
no_follow_renames: args.no_follow_renames,
merged: args.merged,
limit: args.limit,
};
return handle_file_history(config_override, fh_args, robot_mode);
}
// ... existing trace logic ...
}
```
**File:** `src/app/robot_docs.rs` -- Update trace entry, mark file-history as deprecated:
```rust
"trace": {
"description": "Trace why code was introduced: file -> MR -> issue -> discussion. Use --mrs-only for flat MR listing.",
"flags": ["<path>", "-p/--project", "--discussions", "--no-follow-renames", "-n/--limit", "--mrs-only", "--merged"],
...
},
"file-history": {
"hidden": true,
"deprecated": "Use 'trace --mrs-only' instead",
...
}
```
**Verification:**
- `lore trace src/main.rs` works unchanged
- `lore trace src/main.rs --mrs-only` produces file-history output
- `lore trace src/main.rs --mrs-only --merged` filters to merged MRs
- `lore file-history src/main.rs` still works (hidden command)
- `lore --help` shows only `trace` in File Analysis group
**Files touched:** `src/cli/args.rs`, `src/cli/mod.rs`, `src/app/handlers.rs`, `src/app/robot_docs.rs`
---
### P8: Make `count` a Flag on Entity Commands
**Goal:** `lore issues --count` replaces `lore count issues`. Standalone `count` becomes hidden.
**File:** `src/cli/args.rs` -- Add `--count` to `IssuesArgs`, `MrsArgs`, `NotesArgs`:
```rust
// In IssuesArgs:
/// Show count only (no listing)
#[arg(long, help_heading = "Output", conflicts_with_all = ["iid", "open"])]
pub count: bool,
// In MrsArgs:
/// Show count only (no listing)
#[arg(long, help_heading = "Output", conflicts_with_all = ["iid", "open"])]
pub count: bool,
// In NotesArgs:
/// Show count only (no listing)
#[arg(long, help_heading = "Output", conflicts_with = "open")]
pub count: bool,
```
**File:** `src/app/handlers.rs` -- In `handle_issues`, `handle_mrs`, `handle_notes`, check the count flag early:
```rust
// In handle_issues (pseudocode):
if args.count {
let count_args = CountArgs { entity: "issues".to_string(), for_entity: None };
return handle_count(config_override, count_args, robot_mode).await;
}
```
**File:** `src/cli/mod.rs` -- Hide `Count`:
```rust
/// Count entities in local database
#[command(hide = true, help_heading = "Query")]
Count(CountArgs),
```
**File:** `src/app/robot_docs.rs` -- Mark count as hidden, add `--count` documentation to issues/mrs/notes entries.
**Verification:**
- `lore issues --count` returns issue count
- `lore mrs --count` returns MR count
- `lore notes --count` returns note count
- `lore count issues` still works (hidden)
- `lore count discussions --for mr` still works (no equivalent in the new pattern -- discussions/events/references still need the standalone `count` command)
**Important note:** `count` supports entity types that don't have their own command (discussions, events, references). The standalone `count` must remain functional (just hidden). The `--count` flag on `issues`/`mrs`/`notes` handles the common cases only.
**Files touched:** `src/cli/args.rs`, `src/cli/mod.rs`, `src/app/handlers.rs`, `src/app/robot_docs.rs`
---
### P10: Add `--sort` to `search`
**Goal:** Allow sorting search results by score, created date, or updated date.
**File:** `src/cli/args.rs` -- Add to `SearchArgs`:
```rust
/// Sort results by field (score is default for ranked search)
#[arg(long, value_parser = ["score", "created", "updated"], default_value = "score", help_heading = "Sorting")]
pub sort: String,
/// Sort ascending (default: descending)
#[arg(long, help_heading = "Sorting", overrides_with = "no_asc")]
pub asc: bool,
#[arg(long = "no-asc", hide = true, overrides_with = "asc")]
pub no_asc: bool,
```
**File:** `src/cli/commands/search.rs` -- Thread the sort parameter through to the search query.
The search function currently returns results sorted by score. When `--sort created` or `--sort updated` is specified, apply an `ORDER BY` clause to the final result set.
**File:** `src/app/robot_docs.rs` -- Add `--sort` and `--asc` to the search command's flags list.
**Verification:**
- `lore search 'auth' --sort score` (default, unchanged)
- `lore search 'auth' --sort created --asc` (oldest first)
- `lore search 'auth' --sort updated` (most recently updated first)
**Files touched:** `src/cli/args.rs`, `src/cli/commands/search.rs`, `src/app/robot_docs.rs`
---
### Phase 3 Commit Summary
**Commit C: Consolidate file-history into trace**
- `src/cli/args.rs`, `src/cli/mod.rs`, `src/app/handlers.rs`, `src/app/robot_docs.rs`
**Commit D: Add `--count` flag to entity commands**
- `src/cli/args.rs`, `src/cli/mod.rs`, `src/app/handlers.rs`, `src/app/robot_docs.rs`
**Commit E: Add `--sort` to search**
- `src/cli/args.rs`, `src/cli/commands/search.rs`, `src/app/robot_docs.rs`
**Test plan:**
```bash
cargo check --all-targets
cargo clippy --all-targets -- -D warnings
cargo fmt --check
cargo test
# trace consolidation
lore trace src/main.rs --mrs-only
lore trace src/main.rs --mrs-only --merged --discussions
lore file-history src/main.rs # backward compat
# count flag
lore issues --count
lore mrs --count -s opened
lore notes --count --for-issue 42
lore count discussions --for mr # still works
# search sort
lore search 'auth' --sort created --asc
```
---
## Documentation Updates
After all implementation is complete:
### CLAUDE.md / AGENTS.md
Update the robot mode command reference to reflect:
- `stats` -> `index` (with note that `stats` is a hidden alias)
- `health` -> `doctor --quick` (with note that `health` is a hidden alias)
- Remove `ingest`, `generate-docs`, `embed` from the primary command table (mention as "hidden, use `sync`")
- Remove `file-history` from primary table (mention as "hidden, use `trace --mrs-only`")
- Add `--count` flag to issues/mrs/notes documentation
- Add `--sort` flag to search documentation
- Add `--mrs-only` and `--merged` flags to trace documentation
### robot-docs Self-Discovery
The `robot_docs.rs` changes above handle this. Key points:
- New `"hidden": true` field on deprecated/hidden commands
- Updated descriptions mentioning canonical alternatives
- Updated flags lists
- Updated workflows section
---
## File Impact Summary
| File | Phase 1 | Phase 2 | Phase 3 | Total Changes |
|------|---------|---------|---------|---------------|
| `src/cli/mod.rs` | help_heading, drift value_parser | stats->index rename, hide health, hide pipeline stages | hide file-history, hide count | 4 passes |
| `src/cli/args.rs` | singular/plural, remove `-f`, add `-o` | — | `--mrs-only`/`--merged` on trace, `--count` on entities, `--sort` on search | 2 passes |
| `src/app/handlers.rs` | normalize entity strings | route doctor --quick | trace mrs-only delegation, count flag routing | 3 passes |
| `src/app/robot_docs.rs` | update count flags | rename stats->index, merge health+doctor, add hidden field | update trace, file-history, count, search entries | 3 passes |
| `src/cli/autocorrect.rs` | — | update CANONICAL_SUBCOMMANDS, SUBCOMMAND_ALIASES, COMMAND_FLAGS | — | 1 pass |
| `src/main.rs` | — | stats->index variant rename, doctor variant change | — | 1 pass |
| `src/cli/commands/search.rs` | — | — | sort parameter threading | 1 pass |
---
## Before / After Summary
### Command Count
| Metric | Before | After | Delta |
|--------|--------|-------|-------|
| Visible top-level commands | 29 | 21 | -8 (-28%) |
| Hidden commands (functional) | 4 | 12 | +8 (absorbed) |
| Stub/unimplemented commands | 2 | 2 | 0 |
| Total functional commands | 33 | 33 | 0 (nothing lost) |
### `lore --help` Output
**Before (29 commands, flat list, ~50 lines of commands):**
```
Commands:
issues List or show issues [aliases: issue]
mrs List or show merge requests [aliases: mr]
notes List notes from discussions [aliases: note]
ingest Ingest data from GitLab
count Count entities in local database
status Show sync state [aliases: st]
auth Verify GitLab authentication
doctor Check environment health
version Show version information
init Initialize configuration and database
search Search indexed documents [aliases: find]
stats Show document and index statistics [aliases: stat]
generate-docs Generate searchable documents from ingested data
embed Generate vector embeddings for documents via Ollama
sync Run full sync pipeline: ingest -> generate-docs -> embed
migrate Run pending database migrations
health Quick health check: config, database, schema version
robot-docs Machine-readable command manifest for agent self-discovery
completions Generate shell completions
timeline Show a chronological timeline of events matching a query
who People intelligence: experts, workload, active discussions, overlap
me Personal work dashboard: open issues, authored/reviewing MRs, activity
file-history Show MRs that touched a file, with linked discussions
trace Trace why code was introduced: file -> MR -> issue -> discussion
drift Detect discussion divergence from original intent
related Find semantically related entities via vector search
cron Manage cron-based automatic syncing
token Manage stored GitLab token
help Print this message or the help of the given subcommand(s)
```
**After (21 commands, grouped, ~35 lines of commands):**
```
Query:
issues List or show issues [aliases: issue]
mrs List or show merge requests [aliases: mr]
notes List notes from discussions [aliases: note]
search Search indexed documents [aliases: find]
Intelligence:
timeline Chronological timeline of events
who People intelligence: experts, workload, overlap
me Personal work dashboard
File Analysis:
trace Trace code provenance / file history
related Find semantically related entities
drift Detect discussion divergence
Data Pipeline:
sync Run full sync pipeline
System:
init Initialize configuration and database
status Show sync state [aliases: st]
doctor Check environment health (--quick for pre-flight)
index Document and index statistics [aliases: idx]
auth Verify GitLab authentication
token Manage stored GitLab token
migrate Run pending database migrations
cron Manage automatic syncing
robot-docs Agent self-discovery manifest
completions Generate shell completions
version Show version information
```
### Flag Consistency
| Issue | Before | After |
|-------|--------|-------|
| `-f` collision (force vs for) | `ingest -f`=force, `count -f`=for | `-f` removed from count; `-f` = force everywhere |
| Singular/plural entity types | `count issues` but `search --type issue` | Both forms accepted everywhere |
| `notes --open` missing `-o` | `notes --open` (no shorthand) | `notes -o` works (matches issues/mrs) |
| `search` missing `--sort` | No sort override | `--sort score\|created\|updated` + `--asc` |
### Naming Confusion
| Before | After | Resolution |
|--------|-------|------------|
| `status` vs `stats` vs `stat` (3 names, 2 commands) | `status` + `index` (2 names, 2 commands) | Eliminated near-homonym collision |
| `health` vs `doctor` (2 commands, overlapping scope) | `doctor` + `doctor --quick` (1 command) | Progressive disclosure |
| `trace` vs `file-history` (2 commands, overlapping function) | `trace` + `trace --mrs-only` (1 command) | Superset absorbs subset |
### Robot Ergonomics
| Metric | Before | After |
|--------|--------|-------|
| Commands in robot-docs manifest | 29 | 21 visible + hidden section |
| Agent decision space for "system check" | 4 commands | 2 commands (status, doctor) |
| Agent decision space for "file query" | 3 commands + 2 who modes | 1 command (trace) + 2 who modes |
| Entity type parse errors from singular/plural | Common | Eliminated |
| Estimated token cost of robot-docs | Baseline | ~15% reduction (fewer entries, hidden flagged) |
### What Stays Exactly The Same
- All 33 functional commands remain callable (nothing is removed)
- All existing flags and their behavior are preserved
- All response schemas are unchanged
- All exit codes are unchanged
- The autocorrect system continues to work
- All hidden/deprecated commands emit their existing warnings
### What Breaks (Intentional)
- `lore count -f mr` (the `-f` shorthand) -- must use `--for` instead
- `lore --help` layout changes (commands are grouped, 8 commands hidden)
- `lore robot-docs` output changes (new `hidden` field, renamed keys)
- Any scripts parsing `--help` text (but `robot-docs` is the stable contract)