feat(surgical-sync): add per-IID surgical sync pipeline
Wire --issue/--mr surgical dispatch, fix effective_project resolution bug, remove dead struct fields and stale allow annotations, fix collapsible-if clippy lints from concurrent changes. Pipeline: PREFLIGHT -> TOCTOU -> INGEST -> DEPENDENTS -> DOCS -> EMBED -> FINALIZE Token management: add lore token set/show commands with config file storage
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