feat(surgical-sync): add per-IID surgical sync pipeline

Wire --issue/--mr surgical dispatch, fix effective_project resolution bug,
remove dead struct fields and stale allow annotations, fix collapsible-if
clippy lints from concurrent changes.

Pipeline: PREFLIGHT -> TOCTOU -> INGEST -> DEPENDENTS -> DOCS -> EMBED -> FINALIZE
Token management: add lore token set/show commands with config file storage

src/cli/autocorrect.rs

@@ -130,6 +130,10 @@ const COMMAND_FLAGS: &[(&str, &[&str])] = &[
             "--no-dry-run",
             "--timings",
             "--lock",
+            "--issue",
+            "--mr",
+            "--project",
+            "--preflight-only",
         ],
     ),
     (